Difference between revisions of "Arnav Solanki"
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== About Me == | == About Me == | ||
I 'm a Postdoc in [http://www.ece.umn.edu Electrical and Computer Engineering] at the [http://www.umn.edu University of Minnesota], advised by Prof. [[Marc Riedel]]. I was born in Jaipur, India. I like learning random facts about space and biology (though I struggle remembering the latter)! | I'm a Postdoc in [http://www.ece.umn.edu Electrical and Computer Engineering] at the [http://www.umn.edu University of Minnesota], advised by Prof. [[Marc Riedel]]. I completed my Ph.D. in the same group in 2023. I was born in Jaipur, India. | ||
I like learning random facts about space and biology (though I struggle remembering the latter)! | |||
== Research == | == Research == | ||
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|- valign="top" | |- valign="top" | ||
| width="100" | '''title''': | | width="100" | '''title''': | ||
| width="500" | [ | | width="500" | [[Media:Solanki chen riedel computing mathematical functions with chemical reactions via stochastic logic.pdf|Computing Mathematical Functions with Chemical Reactions via Stochastic Logic]] | ||
|- valign="top" | |- valign="top" | ||
| '''authors''': | | '''authors''': | ||
| [[Arnav Solanki]], [[ | | [[Arnav Solanki]], [[Tonglin Chen]], and [[Marc Riedel]] | ||
|- valign="top" | |- valign="top" | ||
| ''' | | '''appeared in''': | ||
| [ | | [https://doi.org/10.1371/journal.pone.0281574 PLOS One], Vol. 18, No. 5, 2023 | ||
|} | |} | ||
| align="center" width="70" | | | align="center" width="70" | | ||
<span class="plainlinks"> | <span class="plainlinks"> | ||
[ | [https://mriedel.ece.umn.edu/wiki/images/5/57/Solanki_chen_riedel_computing_mathematical_functions_with_chemical_reactions_via_stochastic_logic.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | ||
<br> | <br> | ||
[ | [[Media:Solanki_chen_riedel_computing_mathematical_functions_with_chemical_reactions_via_stochastic_logic.pdf | Paper]] | ||
| align="center" width="70" | | |} | ||
{| | |||
| | |||
{| style="background:#F0E68C" | |||
|- valign="top" | |||
| width="100" | '''title''': | |||
| width="500" | [[Media:Solanki-griffin-sutradhar-ganguly-riedel-neural-network-execution-using-nicked-dna-and-microfluidics.pdf|Neural Network Execution Using Nicked DNA and Microfluidics]] | |||
|- valign="top" | |||
| '''authors''': | |||
| [[Arnav Solanki]], Zak Griffin, Purab Ranjan Sutradhar, [https://www.rit.edu/directory/axgeec-amlan-ganguly Amlan Ganguly], [[Marc Riedel]] | |||
|- valign="top" | |||
| '''under review''': | |||
| [https://arxiv.org/abs/2211.15494 PLOS One], 2023 | |||
|} | |||
| align="center" width="70" | | |||
<span class="plainlinks"> | <span class="plainlinks"> | ||
[ | [https://mriedel.ece.umn.edu/wiki/images/7/79/Solanki-griffin-sutradhar-ganguly-riedel-neural-network-execution-using-nicked-dna-and-microfluidics.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | ||
<br> | <br> | ||
[http://mriedel.ece.umn.edu/wiki/images/ | [[Media:Solanki-griffin-sutradhar-ganguly-riedel-neural-network-execution-using-nicked-dna-and-microfluidics.pdf | Paper]] | ||
|} | |||
{| | |||
| | |||
{| style="background:#F0E68C" | |||
|- valign="top" | |||
| width="100" | '''title''': | |||
| width="500" | [https://mriedel.ece.umn.edu/wiki/images/b/b2/Solanki-chen-riedel-parallel-pairwise-operations-on-data-stored-in-dna-sorting-xor-shifting-and-searching.pdf Parallel Pairwise Operations on Data Stored in DNA: Sorting, XOR, Shifting, and Searching] | |||
|- valign="top" | |||
| '''authors''': | |||
| [[Arnav Solanki]], [[Tonglin Chen]], and [[Marc Riedel]] | |||
|- valign="top" | |||
| '''under review in''': | |||
| [https://www.springer.com/journal/11047 Natural Computing], 2023 | |||
|- valign="top" | |||
| '''presented at''': | |||
| [https://www.iwbdaconf.org/2019/ International Workshop on Bio-Design Automation], Cambridge, England, 2019. | |||
|- valign="top" | |||
| '''presented at''': | |||
| [https://drops.dagstuhl.de/opus/portals/lipics/index.php?semnr=16207 International Conference on DNA Computing and Molecular Programming], 2021 | |||
|} | |||
| width="70" align="center" | | |||
<span class="plainlinks">[https://mriedel.ece.umn.edu/wiki/images/b/b2/Solanki-chen-riedel-parallel-pairwise-operations-on-data-stored-in-dna-sorting-xor-shifting-and-searching.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | |||
<br>[https://mriedel.ece.umn.edu/wiki/images/b/b2/Solanki-chen-riedel-parallel-pairwise-operations-on-data-stored-in-dna-sorting-xor-shifting-and-searching.pdf Paper] | |||
| width="70" align="center" | | |||
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/d/d5/DNA27_Presentation.pdf http://mriedel.ece.umn.edu/wiki/images/3/36/Ppt.jpg]</span> | |||
<br> [http://mriedel.ece.umn.edu/wiki/images/d/d5/DNA27_Presentation.pdf Slides] | |||
|} | |} | ||
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|- valign="top" | |- valign="top" | ||
| width="100" | '''title''': | | width="100" | '''title''': | ||
| width="500" | [//http://mriedel.ece.umn.edu/wiki/images/ | | width="500" | [//http://mriedel.ece.umn.edu/wiki/images/5/58/VCIP2021_Blind.pdf Cascadable Stochastic Logic for DNA Storage] | ||
|- valign="top" | |- valign="top" | ||
| '''authors''': | | '''authors''': | ||
| [[ | | [[Arnav Solanki]], [[Tonglin Chen]] and [[Marc Riedel]] | ||
|- valign="top" | |- valign="top" | ||
| '''presented at''': | | '''presented at''': | ||
| [ | | [https://www.vcip2021.org/ IEEE Visual Communications and Image Processing Conference], 2021 | ||
|} | |} | ||
| | | width="70" align="center" | | ||
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/ | <span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/5/58/VCIP2021_Blind.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | ||
<br>[http://mriedel.ece.umn.edu/wiki/images/ | <br>[http://mriedel.ece.umn.edu/wiki/images/5/58/VCIP2021_Blind.pdf Paper] | ||
|} | |} | ||
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|- valign="top" | |- valign="top" | ||
| width="100" | '''title''': | | width="100" | '''title''': | ||
| width="500" | [ | | width="500" | [//mriedel.ece.umn.edu/wiki/images/8/81/FNANO20_Random_Cutting.pdf Stochastic Computation on DNA strands through Hydroxyl Nicking] | ||
|- valign="top" | |- valign="top" | ||
| '''authors''': | | '''authors''': | ||
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| [https://www2.cs.duke.edu/FNANO/ Foundations of Nanoscience: Self-Assembled Architectures and Devices], 2020 | | [https://www2.cs.duke.edu/FNANO/ Foundations of Nanoscience: Self-Assembled Architectures and Devices], 2020 | ||
|} | |} | ||
| | | width="70" align="center" | | ||
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/8/81/FNANO20_Random_Cutting.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | <span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/8/81/FNANO20_Random_Cutting.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | ||
<br>[http://mriedel.ece.umn.edu/wiki/images/8/81/FNANO20_Random_Cutting.pdf | <br>[http://mriedel.ece.umn.edu/wiki/images/8/81/FNANO20_Random_Cutting.pdf Abstract] | ||
| | | width="70" align="center" | | ||
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/2/29/FNANO_poster2020.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | <span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/2/29/FNANO_poster2020.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | ||
<br> [http://mriedel.ece.umn.edu/wiki/images/2/29/FNANO_poster2020.pdf Poster] | <br> [http://mriedel.ece.umn.edu/wiki/images/2/29/FNANO_poster2020.pdf Poster] | ||
|} | |||
{| | |||
| | |||
{| style="background:#F0E68C" | |||
|- valign="top" | |||
| width="100" | '''title''': | |||
| width="500" | [http://mriedel.ece.umn.edu/wiki/images/3/38/Chen_Solanki_Riedel_Concentration-Based-Polynomial-Calculations-on-Nicked-DNA.pdf Concentration-Based Polynomial Calculations on Nicked DNA] | |||
|- valign="top" | |||
| '''authors''': | |||
| [[Tonglin Chen]] and [[Marc Riedel]] | |||
|- valign="top" | |||
| '''presented at''': | |||
| [https://rc.signalprocessingsociety.org/conferences/icassp-2020/SPSICASSP20VID1364.html IEEE International Conference on Acoustics, Speech, and Signal Processing], 2020 | |||
|} | |||
| width="70" align="center" | | |||
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/3/38/Chen_Solanki_Riedel_Concentration-Based-Polynomial-Calculations-on-Nicked-DNA.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | |||
<br>[http://mriedel.ece.umn.edu/wiki/images/3/38/Chen_Solanki_Riedel_Concentration-Based-Polynomial-Calculations-on-Nicked-DNA.pdf Paper] | |||
|} | |||
{| | |||
| | |||
{| style="background:#F0E68C" | |||
|- valign="top" | |||
| width="100" | '''title''': | |||
| width="500" | [[Media:Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf|Evasive Spike Variants Elucidate the Preservation of T cell Immune Response to the SARS-CoV-2 Omicron Variant]] | |||
|- valign="top" | |||
| '''authors''': | |||
| [[Arnav Solanki]], [[Marc Riedel]], [https://orion.math.iastate.edu/cornette/ James Cornette], [[Julia Udell]], and [https://www.mayo.edu/research/faculty/vasmatzis-george-ph-d/bio-00027811 George Vasmatzis] | |||
|- valign="top" | |||
| '''appeared in''': | |||
| [https://ieeexplore.ieee.org/document/10457533 IEEE/ACM Trans. on Computational Biology and Bioinformatics], pp. 1–11, March, 2024 | |||
|} | |||
| width="70" align="center" | | |||
<span class="plainlinks"> | |||
[https://mriedel.ece.umn.edu/wiki/images/1/12/Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | |||
<br> | |||
[[Media:Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf | Paper]] | |||
|} | |||
{| | |||
| | |||
{| style="background:#F0E68C" | |||
|- valign="top" | |||
| width="100" | '''title''': | |||
| width="500" | [[Media:Solanki Riedel Cornette Udell Vasmatzis Hydrophobicity Identifies False Positives and False Negatives in Peptide-MHC Binding.pdf|Hydrophobicity Identifies False Positives and False Negatives in Peptide-MHC Binding]] | |||
|- valign="top" | |||
| '''authors''': | |||
| [[Arnav Solanki]], [[Marc Riedel]], [https://orion.math.iastate.edu/cornette/ James Cornette], [[Julia Udell]], and [https://www.mayo.edu/research/faculty/vasmatzis-george-ph-d/bio-00027811 George Vasmatzis] | |||
|- valign="top" | |||
| '''appeared in''': | |||
| [https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2022.1034810/full Frontiers in Oncology], Vol. 12, No. 1034810, 2022 | |||
|- valign="top" | |||
| '''presented at''': | |||
| [http://ismco.net/ 3rd International Symposium on Mathematical and Computational Oncology], 2021 | |||
|} | |||
| align="center" width="70" | | |||
<span class="plainlinks"> | |||
[https://mriedel.ece.umn.edu/wiki/images/1/1b/Solanki_Riedel_Cornette_Udell_Vasmatzis_Hydrophobicity_Identifies_False_Positives_and_False_Negatives_in_Peptide-MHC_Binding.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | |||
<br> | |||
[[Media:Solanki_Riedel_Cornette_Udell_Vasmatzis_Hydrophobicity_Identifies_False_Positives_and_False_Negatives_in_Peptide-MHC_Binding.pdf | Paper]] | |||
| align="center" width="70" | | |||
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/8/8b/ISMCO2021.pdf http://mriedel.ece.umn.edu/wiki/images/3/36/Ppt.jpg]</span> | |||
<br>[http://mriedel.ece.umn.edu/wiki/images/8/8b/ISMCO2021.pdf Slides] | |||
|} | |||
== Thesis == | |||
{| | |||
| | |||
{| style="background:#F0E68C" | |||
|- valign="top" | |||
| width="100" | '''title''': | |||
| width="500" | [https://mriedel.ece.umn.edu/wiki/images/0/0a/Solanki_Carving_a_Niche_in_the_Intersection_of_Computer_Engineering_and_Molecular_Biology.pdf Carving a Niche in the Intersection of Computer Engineering and Molecular Biology] | |||
|- valign="top" | |||
| '''author''': | |||
| [[Arnav Solanki]] | |||
|- valign="top" | |||
| '''degree''': | |||
| Ph.D., [http://www.ece.umn.edu Electrical Engineering], [http://www.umn.edu University of Minnesota] | |||
|- | |||
| '''year''': | |||
| 2023 | |||
|} | |||
| width="70" align="center" | | |||
<span class="plainlinks"> | |||
[https://mriedel.ece.umn.edu/wiki/images/0/0a/Solanki_Carving_a_Niche_in_the_Intersection_of_Computer_Engineering_and_Molecular_Biology.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span> | |||
<br> | |||
[https://mriedel.ece.umn.edu/wiki/images/0/0a/Solanki_Carving_a_Niche_in_the_Intersection_of_Computer_Engineering_and_Molecular_Biology.pdf Ph.D. Dissertation] | |||
|} | |} | ||
== Contact == | == Contact == | ||
Email me at solan053@umn.edu | Email me at solan053@umn.edu |
Latest revision as of 05:13, 10 April 2024
About Me
I'm a Postdoc in Electrical and Computer Engineering at the University of Minnesota, advised by Prof. Marc Riedel. I completed my Ph.D. in the same group in 2023. I was born in Jaipur, India.
I like learning random facts about space and biology (though I struggle remembering the latter)!
Research
My research focus is on Bioinformatics, Cancer Genomics, and DNA computing.
Papers
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Thesis
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Contact
Email me at solan053@umn.edu