References
From The Circuits and Biology Lab at UMN
Here are some papers that are of interest to our research group. (Please add to this list.)
Contents |
Books
- Uri Alon, "Introduction to Systems Biology"
Synthetic/Computational Biology
- Uri Alon, "Network Motifs: Theory and Experimental Approaches."
- Katherine C. Chen, Laurence Calzone, Attila Csikasz-Nagy, Frederick R. Cross, Bela Novak, and John J. Tyson, "Integrative Analysis of Cell Cycle Control in Budding Yeast."
- Daniel T. Gillespie, "Stochastic Simulation of Chemical Kinetics."
- Albert Goldbetert and DanieL E. Koshland, "An Amplified Sensitivity Arising From Covalent Modification in Biological Systems."
- Leland H. Hartwell, John J. Hopfield, Stanislas Leibler and Andrew W. Murray, "From Molecular to Modular Cell Biology."
- Eric Libby, Theodore J. Perkins, and Peter S. Swain, "Noisy Information Processing Through Transcriptional Regulation."
- Tianhai Tian and Kevin Burrage, "Stochastic Models for Regulatory Networks of the Genetic Toggle Switch."
- John J. Tyson, Katherine C. Chen, and Bela Novak, "Sniffers, Buzzers, Toggles and Blinkers."
- Shatam Agarwal and Jaijeet Roychowdhury, "Efficient Multiscale Simulation of Circadian Rhythms using Automated Phase Macromodelling Techniques."
Noisy/Probabilistic Logic
- Itai Benjamin, Gil Kalai and Oded Schramm, "Noise Sensitivity of Boolean Functions and Applications to Percolation."
- Alex Brodsky and Nicholas Pippenger, "The Boolean Functions Computed by Random Boolean Formulas or How to Grow the Right Function."
- M. Kochen, "Extension of Moore-Shannon Model for Relay Circuits."
- Smita Krishnaswamy, George Viamontes, Igor Markov, and John Hayes, "Probabilistic Transfer Matrices in Symbolic Reliability Analysis of Logic Circuits."
- E. F. Moore and C. E. Shannon, "Reliable Circuits Using Less Reliable Relays."
- Nicholas Pippenger and Geng Lin, "Fault-Tolerant Circuit-Switching Networks."
Feedback
- Wolfgang Maass, Prashant Joshi, and Eduardo D. Sontag, "Computational Aspects of Feedback in Neural Circuits."
- Jie-Hong R. Jiang, Alan Mishchenko, and Robert k. Brayton, " On Breakable Cyclic Definitions."
